Full Paper View Go Back
MicroRNA Biogenesis, Mechanisms of Function, Circulation and Application Role in Human Diseases
Zahraa Isam Jameel1
Section:Research Paper, Product Type: Journal-Paper
Vol.10 ,
Issue.5 , pp.71-80, Oct-2023
Online published on Oct 31, 2023
Copyright © Zahraa Isam Jameel . This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
View this paper at Google Scholar | DPI Digital Library
How to Cite this Paper
- IEEE Citation
- MLA Citation
- APA Citation
- BibTex Citation
- RIS Citation
IEEE Style Citation: Zahraa Isam Jameel , “MicroRNA Biogenesis, Mechanisms of Function, Circulation and Application Role in Human Diseases,” International Journal of Scientific Research in Biological Sciences, Vol.10, Issue.5, pp.71-80, 2023.
MLA Style Citation: Zahraa Isam Jameel "MicroRNA Biogenesis, Mechanisms of Function, Circulation and Application Role in Human Diseases." International Journal of Scientific Research in Biological Sciences 10.5 (2023): 71-80.
APA Style Citation: Zahraa Isam Jameel , (2023). MicroRNA Biogenesis, Mechanisms of Function, Circulation and Application Role in Human Diseases. International Journal of Scientific Research in Biological Sciences, 10(5), 71-80.
BibTex Style Citation:
@article{Jameel_2023,
author = {Zahraa Isam Jameel },
title = {MicroRNA Biogenesis, Mechanisms of Function, Circulation and Application Role in Human Diseases},
journal = {International Journal of Scientific Research in Biological Sciences},
issue_date = {10 2023},
volume = {10},
Issue = {5},
month = {10},
year = {2023},
issn = {2347-2693},
pages = {71-80},
url = {https://www.isroset.org/journal/IJSRBS/full_paper_view.php?paper_id=3311},
publisher = {IJCSE, Indore, INDIA},
}
RIS Style Citation:
TY - JOUR
UR - https://www.isroset.org/journal/IJSRBS/full_paper_view.php?paper_id=3311
TI - MicroRNA Biogenesis, Mechanisms of Function, Circulation and Application Role in Human Diseases
T2 - International Journal of Scientific Research in Biological Sciences
AU - Zahraa Isam Jameel
PY - 2023
DA - 2023/10/31
PB - IJCSE, Indore, INDIA
SP - 71-80
IS - 5
VL - 10
SN - 2347-2693
ER -
Abstract :
The field of microRNA research has shown significant growth during the past decade. MicroRNA (miRNA) profiles have been identified as indicative of pathological conditions and have shown potential as biomarkers for diagnosing and evaluating human diseases. The mammalian genome encompasses a collection of more than 2200 miRNA genes, of which more than 1000 are attributed to the human genome. MicroRNAs (miRNAs) have been identified as regulators of essential cellular functions, such as development, differentiation, growth, and metabolism. The influence of gene proximity within the genome and their positioning within introns of coding genes, noncoding genes, and exons has significantly impacted gene expression levels in eukaryotic cells. MicroRNAs (miRNAs) exhibit substantial conservation throughout eukaryotic creatures, suggesting their enduring importance as a component of gene regulation networks. In this study, we want to elucidate fundamental inquiries about the role of microRNAs in human disease and the consequential clinical implications of these molecules. This discussion focuses on micro-RNAs` role in epigenetics, cancer, and metabolic illnesses. Illustrative instances are drawn from cholangiocarcinoma and nonalcoholic fatty liver disease.
Key-Words / Index Term :
miRNA, human disease, biogenesis, canonical pathway, epigenetics
References :
[1] Bonnie Bartel, “MicroRNAs directing Sirna biogenesis,” Nature Structural & Molecular Biology, vol. 12, issue. 7, pp. 569–571, 2005.
[2] Daehyun Baek et al., “The impact of micrornas on protein output,” Nature, vol. 455, issue. 7209, pp. 64–71, 2008.
[3] Rosalind Lee, Rhonda Feinbaum, and Victor Ambros, “The C. elegans heterochronic gene lin-4 encodes small RNAS with antisense complementarity to lin-14,” Cell, vol. 75, issue. 5, pp. 843–854, 1993
[4] Brenda Reinhart et al., “The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans,” Nature, vol. 403, issue. 6772, pp. 901–906, 2000.
[5] Alex Kozomara and Sara Griffiths-Jones, “Mirbase: Integrating microrna annotation and deep-sequencing data,” Nucleic Acids Research, vol. 39, issue. Database, 2010.
[6] Rujuan Dai and Salem Ahmed, “MicroRNA, a new paradigm for understanding immunoregulation, inflammation, and autoimmune diseases,” Translational Research, vol. 157, issue. 4, pp. 163–179, 2011.
[7] Scott Hammond, “An overview of micrornas,” Advanced Drug Delivery Reviews, vol. 87, pp. 3–14, 2015.
[8] Vaola Palanisamy, Aliex Jakymiw, effet Van Tubergen, Noor D’Silva, and K.aoles Kirkwood, “Control of cytokine mRNA expression by RNA-binding proteins and microRNAs,” Journal of Dental Research, vol. 91, issue. 7, pp. 651–658, 2012.
[9] Yong Peng and Carlo Croce, “The role of micrornas in human cancer,” Signal Transduction and Targeted Therapy, vol. 1, issue. 1, 2016.
[10] Chiara Vavassori, Eleonora Cipriani, and Gualtiero Colombo, “Circulating micrornas as novel biomarkers in risk assessment and prognosis of coronary artery disease,” European Cardiology Review, vol. 17, 2022.
[11] Mina Poy, Molar Spranger, and Mina Stoffel, “MicroRNAs and the regulation of glucose and lipid metabolism,” Diabetes, Obesity and Metabolism, vol. 9, issue. s2, pp. 67–73, 2007.
[12] Andreas Keller et al., “Toward the blood-borne misnomer of human diseases," Nature Methods, vol. 8, issue. 10, pp. 841–843, 2011.
[13] Minju Ha and Verry Kim, “Regulation of microrna biogenesis,” Nature Reviews Molecular Cell Biology, vol. 15, issue. 8, pp. 509–524, 2014.
[14] James Broughton, Michael Lovci, Jessica Huang, Gene Yeo, and Amy Pasquinelli, “Pairing beyond the seed supports MicroRNA targeting specificity,” Molecular Cell, vol. 64, issue. 2, pp. 320–333, 2016.
[15] Shobha Vasudevan, “Posttranscriptional upregulation by micrornas,” WIREs RNA, vol. 3, no. 3, pp. 311–330, 2011.
[16] Julia Makarova et al., “Intracellular and extracellular microRNA: An update on localization and biological role," Progress in Histochemistry and Cytochemistry, vol. 51, issue. 3–4, pp. 33–49, 2016.
[17] Guodong Fu, Jelena Brki? Heyam Hayder, and Chun Peng, “MicroRNAs in human placental development and pregnancy complications,” International Journal of Molecular Sciences, vol. 14, issue. 3, pp. 5519–5544, 2013.
[18] Kemal Tüfekci, Meryem Öner, Ralph Meuwissen, and ?ermin Genç, “The role of micrornas in human diseases,” miRNomics: MicroRNA Biology and Computational Analysis, pp. 33–50, 2013.
[19] Prosenjit Paul et al., “Interplay between miRNAs and human diseases,” Journal of Cellular Physiology, vol. 233, issue. 3, pp. 2007–2018, 2017.
[20] Josie Hayes, Pier Peruzzi, and Sean Lawler, “MicroRNAs in cancer: Biomarkers, functions and therapy,” Trends in Molecular Medicine, vol. 20, issue. 8, pp. 460–469, 2014.
[21] Jin Wang, Jinyun Chen, and Subrata Sen, “MicroRNA as biomarkers and Diagnostics,” Journal of Cellular Physiology, vol. 231, no. 1, pp. 25–30, 2015.
[22] Weili Huang, “MicroRNAs: Biomarkers, diagnostics, and therapeutics,” Bioinformatics in MicroRNA Research, pp. 57–67, 2017.
[23] Derek Rie et al., “An integrated expression atlas of miRNAs and their promoters in human and mouse,” Nature Biotechnology, vol. 35, issue. 9, pp. 872–878, 2017.
[24] Minju Ha and Vier Kim, “Regulation of microrna biogenesis,” Nature Reviews Molecular Cell Biology, vol. 15, issue. 8, pp. 509–524, 2014.
[25] Young-Kook Kim and Verran. Kim, “Processing of intronic micrornas,” The EMBO Journal, vol. 26, issue. 3, pp. 775–783, 2007.
[26] Andrea Tanzer and Peter P. F. Stadler, “Molecular evolution of a MicroRNA cluster,” Journal of Molecular Biology, vol. 339, issue. 2, pp. 327–335, 2004.
[27] Glen Borchert, William Lanier, and Beverly Davidson, “RNA polymerase III transcribes human micrornas,” Nature Structural & Molecular Biology, vol. 13, issue. 12, pp. 1097–1101, 2006.
[28] Vally Kim, Jean Han, and Mella Siomi, “Biogenesis of small RNAS in Animals,” Nature Reviews Molecular Cell Biology, vol. 10, issue. 2, pp. 126–139, 2009.
[29] Rean Yi, Yara Qin, Ineel Macara, and Beren Cullen, “Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAS,” Genes & Development, vol. 17, issue. 24, pp. 3011–3016, 2003.
[30] Jr-ShiuanYang, Thomas Maurin, and Eric. Cella Lai, “Functional parameters of dicer-independent microRNA biogenesis," RNA, vol. 18, issue. 5, pp. 945–957, 2012.
[31] Elisavet Maniataki and Zissimos Mourelatos, “A human, ATP-independent, RISC Assembly machine fueled by pre-miRNA,” Genes & Development, vol. 19, no. 24, pp. 2979–2990, 2005.
[32] Jacob O’Brien, Heyam Hayder, Yara Zayed, and Chun. Peng, “Overview of microrna biogenesis, mechanisms of actions, and circulation,” Frontiers in Endocrinology, vol. 9, 2018.
[33] Olga Plotnikova, Ancha Baranova, and Mikhail Skoblov, “Comprehensive analysis of human microrna–mrna interactome,” Frontiers in Genetics, vol. 10, 2019.
[34] Heyam Hayder, Jacob O’Brien, Uzma Nadeem, and Chun Peng, “MicroRNAs: Crucial regulators of placental development,” Reproduction, vol. 155, no. 6, 2018.
[35] Benjamin Lewis, Christopher Burge, and David Bartel, “Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets," Cell, vol. 120, issue. 1, pp. 15–20, 2005.
[36] Andrew Grimson et al., “MicroRNA targeting specificity in mammals: Determinants beyond seed pairing,” Molecular Cell, vol. 27, no. 1, pp. 91–105, 2007.
[37] Michael Girardot, Jérôme Cavaillé, and Robert Feil, “Small regulatory RNAS controlled by genomic imprinting and their contribution to human disease,” Epigenetics, vol. 7, issue. 12, pp. 1341–1348, 2012.
[38] Constance Baer, Rainer Claus, and Christoph Plass, “Genome-wide epigenetic regulation of miRNAs in cancer,” Cancer Research, vol. 73, issue. 2, pp. 473–477, 2013.
[39] Mark Ptashne, “On the use of the word ‘epigenetic,’” Current Biology, vol. 17, issue. 7, 2007.
[40] Adrian Bird, “Perceptions of epigenetics,” Nature, vol. 447, issue. 7143, pp. 396–398, 2007.
[41] Antonio Giraldez et al., “MicroRNAs regulate brain morphogenesis in zebrafish,” Science, vol. 308, issue. 5723, pp. 833–838, 2005.
[42] Rakesh Pathak and Robert Feil, “Environmental effects on genomic imprinting in development and disease,” Handbook of Nutrition, Diet, and Epigenetics, pp. 3–23, 2019.
[43] Zifeng Wang et al., “Loss of Myc and E-box3 binding contributes to defective Myc-mediated transcriptional suppression of human MC-let-7a-1~let-7d in glioblastoma,” Oncotarget, vol. 7, issue. 35, pp. 56266–56278, 2016.
[44] Ramiro Garzon et al., “MicroRNA-29B induces global DNA hypomethylation and tumor suppressor gene reexpression in acute myeloid leukemia by targeting directly DNMT3A and 3b and indirectly DNMT1,” Blood, vol. 113, issue. 25, pp. 6411–6418, 2009.
[45] Chiara Braconi, Nianyuan Huang, and Tushar Patel, “MicroRNA-dependent regulation of DNA methyltransferase-1 and tumor suppressor gene expression by interleukin-6 in human malignant cholangiocytes,” Hepatology, 2010.
[46] Ingo Volkmann et al., “MicroRNA-mediated epigenetic silencing of SIRTUIN1 contributes to impaired angiogenic responses,” Circulation Research, vol. 113, issue. 8, pp. 997–1003, 2013.
[47] Baohong Zhang, Xiaoping Pan, George Cobb, and Todd Anderson, “MicroRNAs as oncogenes and tumor suppressors,” Developmental Biology, vol. 302, issue. 1, pp. 1–12, 2007.
[48] Peter Androvic, Sarka Benesova, Eva Rohlova, Mikael Kubista, and Lukas Valihrach, “Small RNA-sequencing for analysis of circulating miRNAs,” The Journal of Molecular Diagnostics, vol. 24, issue. 4, pp. 386–394, 2022.
[49] Xinna Zhang, Xiongbin Lu, Gabriel Lopez-Berestein, Anil Sood, and George Calin, “In situ hybridization-based detection of micrornas in human diseases,” microRNA Diagnostics and Therapeutics, vol. 1, issue. 1, 2014.
[50] Charles Lawrie et al., “Detection of elevated levels of tumor-associated microRNAs in serum of patients with diffuse large b?cell lymphoma,” British Journal of Haematology, vol. 141, issue. 5, pp. 672–675, 2008..
[51] Carmen Condrat et al., “MIRNAs as biomarkers in disease: Latest findings regarding their role in diagnosis and prognosis,” Cells, vol. 9, issue. 2, p. 276, 2020.
[52] Dinella Hiam and Servena Lamon, “Circulating micrornas: Let’s not waste the potential,” American Journal of Physiology-Cell Physiology, vol. 319, issue. 2, 2020.
[53] Lewis Hong et al., “Systematic evaluation of multiple qPCR platforms, NanoString and Mirna-Seq for microrna biomarker discovery in human biofluids,” Scientific Reports, vol. 11, issue. 1, 2021.
[54] Ozgan Teksoy, Varol Sahinturk, Mustafa Cengiz, Behcet ?nal, and Adnan Ayhanc?, “The protective effects of Silymarin on thioacetamide-induced liver damage: Measurement of mir-122, Mir-192, and mir-194 levels,” Applied Biochemistry and Biotechnology, vol. 191, issue. 2, pp. 528–539, 2019.
[55] Xieoio Ouyang et al., “Dysregulated serum MIRNA profile and promising biomarkers in dengue-infected patients,” International Journal of Medical Sciences, vol. 13, issue. 3, pp. 195–205, 2016.
[56] Lion Tribolet et al., “MicroRNA biomarkers for infectious diseases: From basic research to biosensing,” Frontiers in Microbiology, vol. 11, 2020.
[57] Santanu Biswas, Mohan Haleyurgirisetty, Sherwin Lee, Indira Hewlett, and Kera Devadas, “Development and validation of plasma MIRNA biomarker signature panel for the detection of early HIV-1 infection,” EBioMedicine, vol. 43, pp. 307–316, 2019.
[58] Kiera Berner et al., “Evaluation of circulating micrornas as non-invasive biomarkers in the diagnosis of ovarian cancer: A case–control study,” Archives of Gynecology and Obstetrics, vol. 306, issue. 1, pp. 151–163, 2021.
[59] Minjie He, Yan Lin, and Yuzhen Xu, “Identification of prognostic biomarkers in colorectal cancer using a long non coding rna mediated competitive endogenous RNA network,” Oncology Letters, 2019.
[60] Hui Liu, Qing-Zhao Bian, Wei Zhang, and Hai-BinCui, “Circulating microrna 103a 3p could be a diagnostic and prognostic biomarker for breast cancer,” Oncology Letters, vol. 23, issue. 1, 2021.
[61] Neslihan Coban, Dilek Pirim, Aycan Erkan, Berkcan Dogan, and Berkay Ekici, “HSA-Mir-584-5P as a novel candidate biomarker in Turkish men with severe coronary artery disease,” Molecular Biology Reports, vol. 47, issue. 2, pp. 1361–1369, 2019.
[62] Zahra Aghili, Nella Nasirizadeh, Auen Divsalar, Shera Shoeibi, and Peter Yaghmaei, “A highly sensitive mir-195 nanobiosensor for early detection of parkinson’s disease,” Artificial Cells, Nanomedicine, and Biotechnology, vol. 46, issue. sup1, pp. 32–40, 2017.
[63] Dongdong Zeng et al., “DNA tetrahedral nanostructure-based electrochemical MIRNA biosensor for simultaneous detection of multiple mirnas in pancreatic carcinoma,” ACS Applied Materials & Interfaces, vol. 9, issue. 28, pp. 24118–24125, 2017.
[64] Song Song, Jean Lee, Mean Jeon, Sam Kim, and Sella Sim, “Detection of multiplex exosomal mirnas for clinically accurate diagnosis of alzheimer’s disease using label-free plasmonic biosensor based on DNA-assembled advanced plasmonic architecture,” Biosensors and Bioelectronics, vol. 199, p. 113864, 2022.
[65] Hiumin He et al., “The apex1/mirna-27a-5p axis plays key roles in progression, metastasis and targeted chemotherapy of gastric cancer,” International Journal of Pharmaceutics, vol. 599, p. 120446, 2021.
[66] Meng Zhang et al., “Mirna-5119 regulates immune checkpoints in dendritic cells to enhance breast cancer immunotherapy,” Cancer Immunology, Immunotherapy, vol. 69, issue. 6, pp. 951–967, 2020.
[67] ChoaFang et al., “Functional Mirna variants affect lung cancer susceptibility and platinum-based chemotherapy response,” Journal of Thoracic Disease, vol. 10, issue. 6, pp. 3329–3340, 2018.
[68] Coral Croce and George Calin, “MIRNAs, cancer, and Stem Cell Division,” Cell, vol. 122, issue. 1, pp. 6–7, 2005.
[69] Sera Hatfield et al., “Stem cell division is regulated by the microrna pathway,” Nature, vol. 435, no. 7044, pp. 974–978, 2005.
[70]George Calin et al., “Frequent deletions and down-regulation of micro- RNA genes mir15 and mir16 at 13q14 in chronic lymphocytic leukemia,” Proceedings of the National Academy of Sciences, vol. 99, issue. 24, pp. 15524–15529, 2002.
[71] Jella Hughes, Hidide Weckert, Catreinvan Holst Pellekaan, Emela Benson, and Iles Dunn, “Translocations into human chromosome 14 JH region: Factors influencing downstream abortive immunoglobulin class switching,” Molecular Immunology, vol. 40, issue. 9, pp. 573–583, 2003.
[72] Sebattein Pfeffer et al., “Identification of virus-encoded micrornas,” Science, vol. 304, issue. 5671, pp. 734–736, 2004.
[73] Kia Berner et al., “Evaluation of circulating micrornas as non-invasive biomarkers in the diagnosis of ovarian cancer: A case–control study,” Archives of Gynecology and Obstetrics, vol. 306, issue. 1, pp. 151–163, 2021.
[74] Finn Grey et al., “Identification and characterization of human cytomegalovirus-encoded micrornas,” Journal of Virology, vol. 79, issue. 18, pp. 12095–12099, 2005.
[75] Nella Schopman et al., “Deep sequencing of virus-infected cells reveals HIV-encoded small RNAS,” issue of Nucleic Acids Research, vol. 40. 1, pp. 414–427, 2011.
[76] Gerazena Gatto et al., “Epstein–Barr virus latent membrane protein 1 trans-activates mir-155 transcription through the NF-?B pathway,” Nucleic Acids Research, vol. 36, issue. 20, pp. 6608–6619, 2008.
[77] Sara Linnstaedt, Ellen Gottwein, Rulla Skalsky, Mella Luftig, and Beren Cullen, “Virally induced cellular microRNA Mir-155 plays a key role in B-Cell Immortalization by Epstein-Barr virus," Journal of Virology, vol. 84, issue. 22, pp. 11670–11678, 2010.
[78] Yong Zhao, Evia Samal, and Deran Srivastava, “Serum response factor regulates a muscle-specific microRNA that targets Hand2 during cardiogenesis,” Nature, vol. 436, issue. 7048, pp. 214–220, 2005.
[79] Tella Thum, Dib Catalucci, and JeanBauersachs, “MicroRNAs: Novel regulators in cardiac development and disease,” Cardiovascular Research, vol. 79, issue. 4, pp. 562–570, 2008.
[80] Yong Zhao et al., “Dysregulation of cardiogenesis, cardiac conduction, and cell cycle in mice lacking MIRNA-1-2,” Cell, vol. 129, issue. 2, pp. 303–317, 2007.
[81] Qing Sang et al., “Identification of micrornas in human follicular fluid: Characterization of micrornas that govern steroidogenesis in vitro and are associated with polycystic ovary syndrome in vivo,” The Journal of Clinical Endocrinology & Metabolism, vol. 98, issue. 7, pp. 3068–3079, 2013.
[82] Veraal Rottiers and Anders Näär, “MicroRNAs in metabolism and metabolic disorders,” Nature Reviews Molecular Cell Biology, vol. 13, issue. 4, pp. 239–250, 2012.
[83] Anna Wieckowska et al., “Increased hepatic and circulating interleukin-6 levels in human nonalcoholic steatohepatitis,” The American Journal of Gastroenterology, vol. 103, issue. 6, pp. 1372–1379, 2008.
[84] Mandeela Martins et al., “Convergence of MIRNA expression profiling, ?-synuclein Interacton and GWAS in parkinson’s disease,” PLoS ONE, vol. 6, issue. 10, 2011.
[85] Barin Popko, “Faculty opinions recommendation of control of peripheral nerve myelination by the beta-secretase Bace1.,” Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature, 2006.
[86] Qiang. Huang et al., “MicroRNA-21 regulates the invasion and metastasis in cholangiocarcinoma and may be a potential biomarker for cancer prognosis,” Asian Pacific Journal of Cancer Prevention, vol. 14, no. 2, pp. 829–834, 2013. doi:10.7314/app.2013.14.2.829
[87] Peter Chusorn et al., “Overexpression of microrna-21 regulating PDCD4 during tumorigenesis of liver fluke-associated cholangiocarcinoma contributes to tumor growth and metastasis,” Tumor Biology, vol. 34, no. 3, pp. 1579–1588, 2013. doi:10.1007/s13277-013-0688-0
[88] Amy Collins et al., “A differential microrna profile distinguishes cholangiocarcinoma from pancreatic adenocarcinoma,” Annals of Surgical Oncology, vol. 21, no. 1, pp. 133–138, 2013. doi:10.1245/s10434-013-3240-y
[89]Shiv Kumar Sharma, Teena Gupta, “A Novel Approach for Plant Environment,” International Journal of Biological Sciences, Vol.4, Issue.12, pp.1-5, 2014.
[90] Reena Solanki, “A Proposed New Approach for Cell Biology,” In the Proceedings of the 2016 International Conference of Medical Sciences, India, pp.542-545, 2016.
You do not have rights to view the full text article.
Please contact administration for subscription to Journal or individual article.
Mail us at support@isroset.org or view contact page for more details.